NucProt Parameter Set

Traditionally, for biomolecular packing calculations research has focused on proteins. Besides proteins, RNA is the other large biomolecule that has tertiary structure interactions and complex packing. No one has yet quantitatively investigated RNA packing or compared its packing to that of proteins because, until recently, there were no large RNA structures. Here we address this question in detail, using Voronoi volume calculations on a set of high-resolution RNA crystal structures.
[ Citation info | Packing-Eff Online! ]

The Voronoi Construction
NucProt Parameters
Downloadable Software Raw Data
  • Protein Geometry Library v2.3.1 (README)
  • Required Program Files
  • List of PDB files used
  • Merged Raw RNA Volume Data (gzipped)
  • Individual Volume Out Files (tar/gzipped)
    [ Standard | Radical | NoSymm ]
  • Grouped Volume Out Files (gzipped)
  • ProtOr Raw Volume Data: protor.out.gz

  • Copyright 1995-2003, M. Gerstein and others
    This page created by Julian Graham
    Last modified by Neil Voss on Feb 3, 2005